BioNLP is an initiative by the Center for Computational Pharmacology at the University of Colorado Denver Health Sciences Center to create and distribute code, software, and data for applying natural language processing techniques to biomedical texts. There are many projects associated with BioNLP.

Projects

Knowtator: a Protege plug-in for text annotation.

MutationFinder: an information extraction system for extracting descriptions of point mutations from free text.

OpenDMAP: an ontology-driven, rule-based concept analysis and information extraction system

BioNLP-Corpora: a repository of biologically and linguistically annotated corpora and biomedical datasets.
This project includes the PICorpus, GeneHomonym, the Annotation Projects, the MEDLINE Mining projects, and the Anaphora Corpus.

BioNLP-UIMA: Unstructured Information Management Architecture (UIMA) components geared towards the use and evaluation of tools for biomedical natural langauge processing, including tools for our own OpenDMAP and MutationFinder use.

NEW!OboAnalyzer: an analysis tool to detect OBO ontology terms that use different linguistic conventions for expressing similar semantics.